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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
134
total RNA-seq
38
ATAC-seq
5
pCHi-C
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
149
DNA binding
136
Transcription
39
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
116
May, 2021
46
August, 2017
42
August, 2021
39
February, 2018
32
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
October, 2019
5
November, 2019
January, 2018
2
December, 2019
1
August, 2018
Available data
250
bam
214
bigWig
129
tsv
104
fastq
98
bed narrowPeak
36
tagAlign
19
bed bed3+
13
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
333
Homo sapiens
Biosample type
2439
tissue
1044
primary cell
333
in vitro differentiated cells
277
cell line
8
stem cell
Organ
73
connective tissue
25
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
333
AMP
Genome assembly (visualization)
252
hg19
224
GRCh38
Lab
291
AMP-T2D consortium
35
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
106
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
assay_title!
CRISPR RNA-seq
month_released!
January, 2018
October, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
333 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
45
5
6
1
1
embryonic stem cell
28
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
15
4
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