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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
total RNA-seq
186
ATAC-seq
186
single cell RNA-seq
147
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
409
Transcription
274
DNA accessibility
147
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
205
histone
205
histone modification
105
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
37
August, 2017
31
July, 2019
25
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
449
bam
444
bigWig
311
fastq
244
tsv
160
bed narrowPeak
153
zippedFastqFolder
69
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
915
Homo sapiens
Biosample type
2453
tissue
915
primary cell
643
cell line
337
in vitro differentiated cells
8
stem cell
Organ
321
epithelium
258
pancreas
35
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
12
liver
11
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
426
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
459
hg19
377
GRCh38
Lab
401
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
CRISPR RNA-seq
files.file_type!
ibed
month_released!
September, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
915 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
32
12
9
31
1
monocyte
54
15
44
1
1
pancreatic beta cell
11
19
12
9
16
1
exocrine cell
39
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