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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
113
single cell RNA-seq
68
total RNA-seq
61
ChIP-seq
48
snATAC-seq
10
RRBS
7
DNase-seq
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
185
DNA accessibility
183
Transcription
61
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
46
histone
46
histone modification
23
broad histone mark
23
narrow histone mark
12
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
34
October, 2019
31
July, 2019
20
May, 2021
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
180
bam
159
bigWig
151
fastq
73
zippedFastqFolder
66
bed narrowPeak
66
tsv
40
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
16
tagAlign
11
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
448
Homo sapiens
Biosample type
2112
tissue
565
cell line
448
primary cell
344
in vitro differentiated cells
9
stem cell
Organ
386
epithelium
pancreas
33
vasculature
29
blood vessel
23
kidney
22
vein
21
connective tissue
16
brain
12
liver
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
275
AMP
172
HPAP
1
ITG
Genome assembly (visualization)
188
hg19
117
GRCh38
Lab
275
AMP-T2D consortium
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
28
audit script error
19
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
CRISPR RNA-seq
lab.title!
Kyle Gaulton, UCSD
month_released!
June, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
448 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
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