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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ATAC-seq
184
ChIP-seq
174
single cell RNA-seq
125
total RNA-seq
87
RNA microarray
28
snATAC-seq
11
RRBS
10
WGBS
5
Hi-C
5
pCHi-C
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
299
Transcription
223
DNA accessibility
184
DNA binding
21
DNA methylation
5
3D chromatin structure
Target of assay
161
histone
161
histone modification
81
broad histone mark
80
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
114
August, 2017
95
February, 2023
93
February, 2021
55
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
March, 2020
22
February, 2020
19
April, 2020
15
May, 2023
13
November, 2017
9
July, 2019
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1670
bigWig
1041
tsv
890
bed narrowPeak
477
bigBed narrowPeak
377
fastq
238
tagAlign
177
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
829
Homo sapiens
Biosample type
831
tissue
478
primary cell
97
in vitro differentiated cells
74
cell line
2
stem cell
Organ
201
kidney
176
heart
92
bone element
71
liver
70
pancreas
53
eye
48
connective tissue
47
adipose tissue
44
blood vessel
44
vasculature
39
artery
37
brain
35
musculature of body
19
lung
15
epithelium
limb
8
skeleton
4
gonad
4
ovary
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
738
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
98
hg19
Lab
504
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
85
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_title!
CRISPR RNA-seq
files.file_type!
bam
month_released!
March, 2020
organ_slims!
limb
BIOSAMPLE
ASSAY
831 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
RRBS
WGBS
Hi-C
pCHi-C
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
28
40
24
7
1
3
4
4
bone element
84
liver
20
23
1
20
1
3
left cardiac atrium
40
18
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