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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
897
total RNA-seq
643
ChIP-seq
55
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
1
DNase-seq
Assay category
919
Transcription
643
DNA binding
60
DNA accessibility
16
DNA methylation
Target of assay
404
histone modification
403
histone
223
narrow histone mark
180
broad histone mark
150
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
446
February, 2021
193
May, 2020
164
August, 2017
118
October, 2019
116
July, 2018
108
May, 2019
79
April, 2019
74
October, 2018
64
November, 2017
63
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
24
May, 2022
17
November, 2018
12
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
Available data
1793
bam
1681
bigWig
1069
tsv
892
bed narrowPeak
477
bigBed narrowPeak
377
fastq
238
tagAlign
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1637
Homo sapiens
Biosample type
1638
tissue
560
primary cell
523
cell line
290
in vitro differentiated cells
3
stem cell
Organ
496
connective tissue
438
adipose tissue
416
pancreas
285
liver
191
brain
105
heart
82
blood vessel
82
vasculature
limb
66
bone element
40
nerve
30
artery
30
kidney
23
spleen
12
musculature of body
8
skeleton
1
pituitary gland
Project
1636
AMP
2
T1D
Genome assembly (visualization)
1453
GRCh38
1414
hg19
Lab
1614
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
CRISPR RNA-seq
files.file_type!
bed broadPeak
organ_slims!
limb
BIOSAMPLE
ASSAY
1638 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
30
37
6
1
1
liver
147
122
1
bone tissue
58
body of pancreas
2
35
4
2
2
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