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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
5
total RNA-seq
2
ATAC-seq
2
WGBS
1
pCHi-C
Assay category
55
DNA binding
5
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
30
histone
30
histone modification
20
broad histone mark
19
control
10
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
40
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
1
February, 2020
1
March, 2020
1
October, 2017
Available data
66
bam
47
bigWig
41
bed narrowPeak
39
bigBed narrowPeak
24
fastq
6
tsv
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
65
Homo sapiens
Biosample type
65
tissue
Organ
915
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
44
GRCh38
42
hg19
Lab
65
AMP-T2D consortium
assay_title!
CRISPR RNA-seq
files.file_type!
bed bed3+
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
tissue
tibial nerve
35
5
1
spleen
20
1
2
1
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