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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
12
ATAC-seq
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
485
Transcription
39
DNA accessibility
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
615
February, 2021
406
November, 2017
341
May, 2020
335
May, 2021
288
October, 2019
223
August, 2017
223
August, 2021
179
June, 2019
103
February, 2023
97
May, 2019
96
May, 2022
94
December, 2017
81
November, 2018
77
July, 2019
47
September, 2023
43
March, 2020
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2018
21
February, 2020
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
4
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
480
bam
475
tsv
469
bigWig
89
txt
39
fastq
11
bed narrowPeak
6
csv
4
bed bedgraph
bed bed3
2
bed bed3+
2
tagAlign
Organism
615
Homo sapiens
Biosample type
545
tissue
41
primary cell
26
in vitro differentiated cells
3
cell line
Organ
454
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
heart
66
vasculature
32
epithelium
pancreas
8
kidney
8
skeleton
6
limb
2
liver
Project
576
AMP
39
HPAP
Genome assembly (visualization)
482
hg19
476
GRCh38
Lab
576
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
assay_title!
CRISPR RNA-seq
files.file_type!
bed bed3
organ_slims!
heart
pancreas
BIOSAMPLE
ASSAY
615 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
snDrop-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cell line
iPSC derived cell line
2
HepG2
1
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