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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
123
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
60
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
22
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
215
bigWig
200
bam
185
bed narrowPeak
165
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
tagAlign
3
bedpe bed3+
3
hic
Organism
375
Homo sapiens
Biosample type
313
tissue
60
cell line
2
primary cell
Organ
923
pancreas
674
liver
connective tissue
517
epithelium
483
adipose tissue
387
heart
352
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
375
AMP
Genome assembly (visualization)
253
GRCh38
175
hg19
Lab
335
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
CRISPR RNA-seq
files.file_type!
tagAlign
lab.title!
Bing Ren, UCSD
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
375 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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