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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
45
ATAC-seq
6
DNase-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
Assay category
76
DNA binding
52
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
52
histone
52
histone modification
31
broad histone mark
21
narrow histone mark
16
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
35
February, 2023
21
October, 2019
14
February, 2021
6
July, 2019
4
June, 2019
3
November, 2017
2
March, 2020
Available data
153
bam
128
bigWig
107
bed narrowPeak
tsv
58
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
135
Homo sapiens
Biosample type
93
tissue
28
primary cell
14
cell line
Organ
617
liver
529
pancreas
368
epithelium
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
135
AMP
Genome assembly (visualization)
107
GRCh38
80
hg19
Lab
135
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
CRISPR RNA-seq
files.file_type!
tsv
organ_slims!
kidney
limb
BIOSAMPLE
ASSAY
135 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
tissue
coronary artery
5
36
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
1
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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