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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
109
total RNA-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
142
DNA binding
109
Transcription
52
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
transcription factor
8
control
5
RNA binding protein
Date released
223
May, 2021
45
May, 2020
23
February, 2023
18
May, 2022
16
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
txt
2
bed bed3+
Organism
325
Homo sapiens
Biosample type
239
primary cell
46
tissue
35
in vitro differentiated cells
5
cell line
Organ
45
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
236
T1D
89
AMP
Genome assembly (visualization)
238
hg19
180
GRCh38
Lab
3163
AMP-T2D consortium
325
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
85
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
27
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
3
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_title!
CRISPR RNA-seq
files.file_type!
txt
month_released!
July, 2018
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
325 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
25
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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