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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
90
ChIP-seq
Assay category
151
DNA accessibility
90
DNA binding
Target of assay
90
histone
90
histone modification
53
broad histone mark
37
narrow histone mark
transcription factor
6
RNA binding protein
Date released
69
August, 2021
65
February, 2023
35
May, 2024
30
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
2673
bigWig
1600
tsv
1348
bed narrowPeak
904
fastq
637
bigBed narrowPeak
389
tagAlign
273
bed broadPeak
254
bed bed3+
236
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
241
Homo sapiens
Biosample type
204
tissue
30
primary cell
4
in vitro differentiated cells
3
cell line
Organ
71
heart
64
kidney
35
artery
35
blood vessel
35
vasculature
27
eye
23
liver
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
241
AMP
Genome assembly (visualization)
134
GRCh38
107
hg19
Lab
85
AMP-T2D consortium
64
Katalin Susztak, Upenn
35
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Struan F.A. Grant, CHOP
3
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
CRISPR RNA-seq
files.file_type!
bam
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
241 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
left cardiac atrium
35
liver
20
retina
15
+ See 7 more…
primary cell
CD8-positive, alpha-beta T cell
30
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
cell line
HepG2
3
See all biosamples
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