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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
84
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
84
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
27
control
27
histone
27
histone modification
27
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2023
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
317
bam
290
bigWig
189
tsv
57
bed narrowPeak
50
tagAlign
35
fastq
30
bigBed narrowPeak
Organism
376
Homo sapiens
Biosample type
200
tissue
147
primary cell
29
cell line
Organ
195
liver
27
blood
27
bodily fluid
7
spleen
Project
331
AMP
45
T1D
Genome assembly (visualization)
290
hg19
237
GRCh38
Lab
331
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
assay_title!
CRISPR RNA-seq
lab.title!
Mark McCarthy, Oxford
month_released!
February, 2023
BIOSAMPLE
ASSAY
376 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
143
50
spleen
7
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
GM12878
27
HepG2
1
1
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