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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
5
RRBS
5
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
21
DNA binding
8
Transcription
5
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
narrow histone mark
5
control
Date released
19
August, 2017
7
June, 2019
5
July, 2019
5
March, 2020
2
May, 2022
1
February, 2020
1
January, 2018
Available data
20
bigWig
13
bam
13
bed narrowPeak
10
tagAlign
9
bed broadPeak
8
tsv
5
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
40
Homo sapiens
Biosample type
30
tissue
10
primary cell
Organ
863
pancreas
731
liver
651
connective tissue
479
adipose tissue
469
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
26
hg19
11
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
assay_title!
CRISPR RNA-seq
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
limb
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
4
1
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
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