Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
34
ChIP-seq
10
ATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
34
DNA binding
14
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
102
bam
85
bigWig
58
tsv
39
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
106
Homo sapiens
Biosample type
66
cell line
38
tissue
2
primary cell
Organ
889
pancreas
791
liver
670
connective tissue
490
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
106
AMP-T2D consortium
assay_title!
CRISPR RNA-seq
lab.title!
Stephen Parker, UMich
month_released!
February, 2023
organ_slims!
esophagus
BIOSAMPLE
ASSAY
106 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
tibial artery
1
23
1
2
coronary artery
1
5
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
Download