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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
84
RNA microarray
58
ATAC-seq
29
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
120
Transcription
62
DNA accessibility
29
DNA binding
Target of assay
18
histone
18
histone modification
14
broad histone mark
7
control
4
narrow histone mark
4
transcription factor
Date released
216
February, 2021
43
February, 2023
27
October, 2019
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
May, 2021
Available data
163
bam
140
bigWig
116
tsv
88
txt
79
bed narrowPeak
22
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
296
Homo sapiens
Biosample type
227
tissue
66
cell line
3
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
295
AMP
1
T1D
Genome assembly (visualization)
191
GRCh38
160
hg19
Lab
295
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_title!
CRISPR RNA-seq
month_released!
May, 2019
BIOSAMPLE
ASSAY
296 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
36
2
tibial artery
1
1
23
2
acetabular part of hip bone
1
1
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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