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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
Assay category
94
DNA binding
56
Transcription
3
DNA accessibility
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
March, 2023
4
October, 2022
3
June, 2018
1
August, 2022
Available data
135
fastq
94
bam
75
bigWig
72
bed narrowPeak
50
bigBed narrowPeak
19
zippedFastqFolder
15
bed bed3+
Organism
153
Homo sapiens
Biosample type
59
primary cell
48
tissue
43
in vitro differentiated cells
3
stem cell
Organ
63
liver
38
epithelium
19
pancreas
13
embryo
Project
94
AMP
59
HPAP
Genome assembly (visualization)
80
GRCh38
77
hg19
Lab
94
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
assay_title!
CRISPR RNA-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
153 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
tissue
liver
38
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
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