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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
single cell RNA-seq
16
total RNA-seq
15
ChIP-seq
10
ATAC-seq
Assay category
59
Transcription
15
DNA binding
10
DNA accessibility
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
March, 2023
4
October, 2022
3
June, 2018
1
August, 2022
Available data
60
fastq
19
bigWig
19
zippedFastqFolder
17
bam
14
tagAlign
11
bed narrowPeak
6
bigBed narrowPeak
4
bed broadPeak
3
tsv
Organism
84
Homo sapiens
Biosample type
62
primary cell
22
tissue
Organ
25
pancreas
20
epithelium
16
brain
1
adipose tissue
1
connective tissue
spleen
Project
59
HPAP
25
AMP
Genome assembly (visualization)
19
GRCh38
15
hg19
Lab
59
Klaus Kaestner, Upenn
24
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
CRISPR RNA-seq
organ_slims!
spleen
BIOSAMPLE
ASSAY
84 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
pancreatic cell
1
pancreatic ductal cell
1
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tissue
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
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