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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
31
DNase-seq
10
RRBS
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
183
DNA accessibility
162
DNA binding
161
Transcription
11
DNA methylation
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
33
October, 2019
27
July, 2019
20
May, 2021
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
November, 2018
Available data
429
bam
384
bigWig
240
fastq
181
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
518
Homo sapiens
Biosample type
2412
tissue
612
cell line
518
primary cell
336
in vitro differentiated cells
8
stem cell
Organ
250
epithelium
194
pancreas
37
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
518
AMP
Genome assembly (visualization)
404
hg19
345
GRCh38
Lab
518
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
CRISPR genome editing followed by DNA sequencing
Hi-C
BIOSAMPLE
ASSAY
518 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
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