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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
10
Transcription
4
DNA accessibility
Date released
84
February, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
419
bam
407
fastq
238
bigWig
188
tsv
184
bed narrowPeak
153
zippedFastqFolder
152
tagAlign
99
txt
43
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
21
hic
18
bigBed broadPeak
15
bed bed3+
15
bed bedMethyl
15
bigBed bedMethyl
10
bed bed3
7
bed bedgraph
4
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
vcf
Organism
98
Homo sapiens
Biosample type
95
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
99
AMP
Genome assembly (visualization)
4
hg19
Lab
90
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
assay_title!
CRISPR genome editing followed by DNA sequencing
STARR-seq
assembly!
GRCh38
organ_slims!
kidney
BIOSAMPLE
ASSAY
99 results
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RNA microarray
total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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