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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
613
total RNA-seq
84
RNA microarray
66
single cell RNA-seq
27
snATAC-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
ChIP-seq
pCHi-C
Assay category
679
Transcription
41
DNA accessibility
6
DNA methylation
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
647
February, 2021
411
August, 2017
406
November, 2017
379
May, 2021
340
May, 2020
302
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
168
July, 2018
166
February, 2023
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
28
March, 2020
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
671
tsv
669
bam
659
bigWig
95
fastq
89
txt
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
tagAlign
Organism
815
Homo sapiens
Biosample type
665
tissue
95
primary cell
29
cell line
26
in vitro differentiated cells
Organ
456
connective tissue
386
adipose tissue
189
pancreas
150
bone element
66
artery
66
blood vessel
heart
66
vasculature
65
epithelium
8
kidney
8
skeleton
6
limb
2
liver
Project
770
AMP
45
HPAP
Genome assembly (visualization)
672
hg19
668
GRCh38
Lab
770
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
134
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
CRISPR genome editing followed by DNA sequencing
pCHi-C
organ_slims!
heart
BIOSAMPLE
ASSAY
815 results
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Clear Filters
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
ChIP-seq
tissue
adipose tissue
381
islet of Langerhans
120
bone element
84
bone tissue
58
kidney
5
+ See 14 more…
primary cell
Langerhans cell
12
27
pancreatic alpha cell
7
6
pancreatic beta cell
9
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 12 more…
cell line
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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