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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
106
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
108
DNA accessibility
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
108
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
61
July, 2019
49
March, 2020
46
September, 2018
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
Available data
65
bed narrowPeak
12
tsv
10
bed bed3
6
bigWig
4
bed bed3+
3
bed bedgraph
3
fastq
3
txt
Organism
110
Homo sapiens
Biosample type
81
tissue
15
primary cell
12
in vitro differentiated cells
3
cell line
Organ
35
artery
35
blood vessel
35
heart
35
vasculature
27
eye
17
pancreas
16
epithelium
10
connective tissue
4
bone element
4
skeleton
1
adipose tissue
1
brain
Project
93
AMP
15
T1D
3
HPAP
Genome assembly (visualization)
45
hg19
38
GRCh38
Lab
90
AMP-T2D consortium
15
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
total RNA-seq
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ATAC-seq
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
coronary artery
35
retina
15
islet of Langerhans
11
2
pigmented layer of retina
12
acetabular part of hip bone
1
+ See 5 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
pancreatic alpha cell
2
+ See 1 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
+ See 2 more…
cell line
EndoC_BH1
2
1
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