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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
59
total RNA-seq
27
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
2
ATAC-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
59
Transcription
27
DNA binding
8
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
166
February, 2023
166
May, 2022
162
August, 2017
134
May, 2020
129
February, 2021
126
November, 2017
123
May, 2021
108
August, 2021
107
October, 2019
48
March, 2020
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
17
December, 2017
16
April, 2019
16
January, 2021
16
September, 2020
10
April, 2020
10
November, 2020
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
8
November, 2018
5
December, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
October, 2022
4
September, 2017
3
March, 2019
2
December, 2019
1
August, 2018
1
August, 2022
Available data
49
txt
16
bed narrowPeak
16
bigWig
10
tsv
8
bam
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
107
Homo sapiens
Biosample type
59
tissue
36
cell line
12
in vitro differentiated cells
1
primary cell
Organ
58
kidney
32
liver
5
connective tissue
4
pancreas
3
epithelium
1
adipose tissue
Project
108
AMP
Genome assembly (visualization)
GRCh38
60
hg19
Lab
56
Katalin Susztak, Upenn
36
Bing Ren, UCSD
12
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
assembly!
GRCh38
month_released!
October, 2022
BIOSAMPLE
ASSAY
108 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
ATAC-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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