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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
879
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
879
DNA binding
293
DNA accessibility
196
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
318
narrow histone mark
297
broad histone mark
184
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
216
October, 2019
179
August, 2021
169
August, 2017
115
May, 2019
101
February, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
46
July, 2019
40
May, 2024
39
May, 2022
31
March, 2020
23
October, 2017
21
November, 2019
19
April, 2020
17
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
1006
bam
984
bed narrowPeak
877
bigWig
561
bigBed narrowPeak
280
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
151
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1532
Homo sapiens
Biosample type
1541
tissue
806
primary cell
543
cell line
233
in vitro differentiated cells
7
stem cell
Organ
271
heart
221
brain
195
pancreas
185
liver
181
kidney
121
blood vessel
121
vasculature
96
bone element
86
connective tissue
85
adipose tissue
79
limb
67
artery
44
musculature of body
36
nerve
34
eye
24
spleen
20
lung
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1451
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
759
GRCh38
670
hg19
Lab
1271
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by DNA sequencing
total RNA-seq
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
1541 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
27
75
64
6
1
1
1
liver
142
20
1
3
1
1
1
1
islet of Langerhans
50
68
6
7
4
3
1
1
4
1
bone element
84
heart left ventricle
35
2
18
4
1
1
1
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