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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
total RNA-seq
12
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
22
DNA binding
12
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
9
February, 2018
8
February, 2021
4
February, 2023
1
January, 2018
1
March, 2020
Available data
30
bam
23
fastq
22
bed narrowPeak
15
bigWig
4
bed bed3
3
bed bed3+
1
tsv
Organism
36
Homo sapiens
Biosample type
23
in vitro differentiated cells
13
tissue
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
27
hg19
23
GRCh38
1
hg18
Lab
36
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
CRISPR genome editing followed by DNA sequencing
total RNA-seq
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
ATAC-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
tissue
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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