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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
MeRIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
whole genome sequencing assay
Assay category
18
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
Target of assay
11
transcription factor
9
control
5
nucleotide modification
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
35
August, 2021
10
November, 2020
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
Organism
47
Homo sapiens
Biosample type
39
cell line
8
tissue
Organ
30
liver
14
pancreas
6
epithelium
2
kidney
Project
47
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
725
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
136
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
whole genome sequencing assay
files.file_type!
bam
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
MeRIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
cell line
HepG2
18
9
2
1
EndoC_BH1
6
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
4
1
2
1
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