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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
Available data
409
bam
397
fastq
232
bigWig
184
bed narrowPeak
183
tsv
153
zippedFastqFolder
152
tagAlign
76
txt
44
bigBed narrowPeak
40
bed broadPeak
18
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
17
hic
16
bedpe bed3+
13
bed bed3+
10
bed bed3
8
csv
6
bed bedgraph
4
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
153
Homo sapiens
Biosample type
153
primary cell
Organ
80
epithelium
80
pancreas
Project
153
HPAP
Lab
153
Klaus Kaestner, Upenn
assay_title!
CRISPR genome editing followed by DNA sequencing
assembly!
GRCh38
audit.ERROR.category!
inconsistent ontology term
organ_slims!
spleen
BIOSAMPLE
ASSAY
153 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
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