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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
6
Hi-C
2
Capture-C
Assay category
20
DNA accessibility
6
3D chromatin structure
Date released
18
May, 2022
4
August, 2021
3
March, 2019
3
October, 2022
Available data
bigWig
198
bam
170
bed narrowPeak
96
tsv
84
tagAlign
19
fastq
6
hic
4
bed bed3+
4
bedpe bed3+
3
bed bedgraph
3
cool
3
txt
1
bed broadPeak
1
bedpe
Organism
28
Homo sapiens
Biosample type
22
tissue
3
primary cell
2
in vitro differentiated cells
1
cell line
Organ
24
pancreas
3
epithelium
2
connective tissue
1
kidney
1
liver
Project
25
AMP
3
HPAP
Genome assembly (visualization)
78
GRCh38
28
hg19
Lab
AMP-T2D consortium
18
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
2
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
3
audit script error
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ATAC-seq
Hi-C
Capture-C
tissue
islet of Langerhans
20
1
kidney
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
cell line
HepG2
1
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