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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
single cell RNA-seq
4
total RNA-seq
1
MPRA
1
snATAC-seq
Assay category
9
Transcription
1
DNA accessibility
Date released
5
February, 2021
4
February, 2023
1
May, 2022
1
October, 2022
Available data
2979
bam
2672
bigWig
1481
bed narrowPeak
1342
tsv
1152
fastq
1018
bigBed narrowPeak
316
bed broadPeak
311
tagAlign
281
bigBed broadPeak
263
bed bed3+
34
bed bedMethyl
34
bigBed bedMethyl
12
bed bed3
11
bedpe bed3+
11
hic
11
txt
8
csv
5
hdf5
4
bed bedgraph
4
tar
1
tagAlign bed3+
Organism
10
Homo sapiens
Biosample type
10
tissue
1
cell line
Organ
5
kidney
4
bone element
4
skeleton
1
musculature of body
Project
11
AMP
Genome assembly (visualization)
1
hg19
Lab
57
Katalin Susztak, Upenn
11
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
6
audit script error
assay_title!
CRISPR genome editing followed by DNA sequencing
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
11 results
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single cell RNA-seq
total RNA-seq
MPRA
snATAC-seq
tissue
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
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cell line
MIN6
1
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