Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
8
DNase-seq
7
WGBS
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
104
DNA binding
9
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
92
transcription factor
23
RNA binding protein
16
recombinant protein
10
control
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
333
May, 2020
311
August, 2021
307
May, 2021
287
October, 2019
286
August, 2017
200
May, 2022
186
June, 2019
181
February, 2023
160
July, 2018
132
February, 2021
117
May, 2019
90
December, 2017
89
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
46
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
November, 2020
4
October, 2022
3
August, 2018
2
June, 2018
1
August, 2022
Available data
122
fastq
120
bam
109
bigWig
102
bed narrowPeak
102
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
122
Homo sapiens
Biosample type
89
cell line
32
tissue
1
primary cell
Organ
54
liver
42
blood
42
bodily fluid
16
spleen
7
pancreas
2
brain
1
adipose tissue
connective tissue
Project
122
AMP
Genome assembly (visualization)
108
GRCh38
100
hg19
Lab
122
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
CRISPR genome editing followed by DNA sequencing
audit.ERROR.category!
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
122 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG2
45
1
1
GM12878
42
tissue
spleen
13
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 1 more…
primary cell
pancreatic cell
1
See all biosamples
Download