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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
total RNA-seq
79
ATAC-seq
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
86
Transcription
81
DNA accessibility
Date released
406
November, 2017
292
October, 2019
254
August, 2017
218
June, 2019
200
May, 2022
173
May, 2021
170
February, 2023
161
August, 2021
152
May, 2020
151
February, 2021
120
May, 2019
87
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
51
December, 2017
47
September, 2023
46
September, 2018
43
July, 2019
40
May, 2024
36
November, 2019
35
December, 2018
25
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
15
March, 2020
15
May, 2023
12
November, 2020
11
September, 2017
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
July, 2018
4
October, 2022
1
August, 2022
1
December, 2019
Available data
76
fastq
63
bed narrowPeak
tsv
5
bed bed3
4
txt
Organism
169
Homo sapiens
Biosample type
91
tissue
76
primary cell
in vitro differentiated cells
3
cell line
Organ
56
pancreas
50
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
27
eye
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
76
HPAP
74
AMP
20
T1D
Genome assembly (visualization)
35
GRCh38
33
hg19
Lab
76
Klaus Kaestner, Upenn
74
AMP-T2D consortium
20
Kyle Gaulton, UCSD
assay_title!
CRISPR genome editing followed by DNA sequencing
biosample_type!
in vitro differentiated cells
files.file_type!
csv
tsv
BIOSAMPLE
ASSAY
170 results
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Clear Filters
total RNA-seq
ATAC-seq
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
5
11
2
retina
15
pigmented layer of retina
12
acetabular part of hip bone
1
1
+ See 6 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
cell line
EndoC_BH1
2
1
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