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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
131
ChIP-seq
35
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
131
DNA binding
35
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
22
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
237
bam
211
bigWig
131
tsv
89
bed narrowPeak
87
fastq
26
tagAlign
18
bed bed3+
16
bigBed narrowPeak
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
319
Homo sapiens
Biosample type
2468
tissue
1029
primary cell
659
cell line
319
in vitro differentiated cells
10
stem cell
Organ
29
embryo
25
connective tissue
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
319
AMP
Genome assembly (visualization)
241
hg19
216
GRCh38
4
hg18
Lab
268
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bed bedgraph
month_released!
August, 2017
organ_slims!
spleen
BIOSAMPLE
ASSAY
319 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
5
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
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