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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
186
ATAC-seq
97
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
41
WGBS
25
DNase-seq
15
pCHi-C
9
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
268
DNA accessibility
267
DNA binding
182
Transcription
51
DNA methylation
9
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
153
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
46
September, 2018
39
February, 2021
38
June, 2019
32
October, 2019
11
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
1
March, 2020
1
March, 2023
Available data
581
bigWig
573
bam
406
fastq
278
bed narrowPeak
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
csv
1
tar
Organism
792
Homo sapiens
Biosample type
1610
tissue
792
primary cell
540
cell line
171
in vitro differentiated cells
6
stem cell
Organ
290
epithelium
238
pancreas
35
vasculature
30
kidney
29
blood vessel
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
366
AMP
318
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
357
hg19
267
GRCh38
Lab
331
AMP-T2D consortium
318
Klaus Kaestner, Upenn
142
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
24
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
csv
tsv
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
792 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
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