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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
694
ChIP-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
1
DNase-seq
Assay category
923
Transcription
694
DNA binding
69
DNA accessibility
17
DNA methylation
Target of assay
454
histone modification
453
histone
237
narrow histone mark
216
broad histone mark
164
control
76
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
182
October, 2019
144
August, 2017
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
24
May, 2022
17
November, 2018
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
4
September, 2017
1
March, 2019
Available data
1907
bam
1772
bigWig
1075
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1696
Homo sapiens
Biosample type
1703
tissue
581
cell line
578
primary cell
272
in vitro differentiated cells
Organ
492
connective tissue
434
adipose tissue
402
pancreas
282
liver
199
brain
105
heart
82
blood vessel
82
vasculature
78
limb
66
bone element
40
nerve
30
artery
30
kidney
23
spleen
12
musculature of body
8
skeleton
1
pituitary gland
Project
1701
AMP
2
T1D
Genome assembly (visualization)
1499
GRCh38
1460
hg19
Lab
1678
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bed bed3+
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
1703 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
9
38
6
1
1
liver
147
119
1
bone tissue
58
body of pancreas
2
35
4
2
2
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