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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
total RNA-seq
2
ATAC-seq
2
Hi-C
1
ChIP-seq
1
pCHi-C
Assay category
3
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
98
February, 2021
87
February, 2023
80
May, 2022
61
September, 2018
57
October, 2019
55
May, 2019
33
April, 2018
33
July, 2018
29
August, 2017
26
May, 2021
19
December, 2017
19
July, 2019
19
September, 2020
16
November, 2019
9
August, 2021
9
March, 2020
7
August, 2020
6
December, 2019
6
June, 2019
6
November, 2017
6
November, 2020
5
September, 2017
3
August, 2018
3
February, 2020
3
October, 2022
2
October, 2018
1
June, 2018
Available data
6
bigWig
5
tsv
4
bam
2
bedpe bed3+
2
hic
1
bed narrowPeak
Organism
9
Homo sapiens
Biosample type
5
cell line
3
tissue
1
primary cell
Organ
14
pancreas
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
6
AMP
3
T1D
Genome assembly (visualization)
8
hg19
4
GRCh38
Lab
9
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
9 results
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total RNA-seq
ATAC-seq
Hi-C
ChIP-seq
pCHi-C
cell line
EndoC_BH1
2
2
1
tissue
aorta
1
1
1
primary cell
endothelial cell of umbilical vein
1
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