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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
64
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
64
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
13
transcription factor
12
narrow histone mark
RNA binding protein
Date released
386
February, 2021
53
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
437
bam
420
bigWig
401
tsv
39
fastq
8
bed narrowPeak
8
tagAlign
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
479
Homo sapiens
Biosample type
477
tissue
2
primary cell
1
in vitro differentiated cells
Organ
910
pancreas
720
liver
647
connective tissue
495
epithelium
480
adipose tissue
352
heart
273
kidney
248
brain
218
vasculature
215
blood vessel
159
bone element
136
artery
86
limb
62
musculature of body
59
blood
59
bodily fluid
56
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
480
AMP
Genome assembly (visualization)
415
hg19
413
GRCh38
Lab
480
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bed bed3+
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
white adipose tissue
8
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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