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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
14
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
20
histone
20
histone modification
broad histone mark
8
narrow histone mark
6
control
Date released
10
July, 2019
9
August, 2017
6
June, 2019
5
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
52
bigWig
49
bam
44
bed narrowPeak
39
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
9
tsv
7
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
38
Homo sapiens
Biosample type
29
tissue
9
primary cell
Organ
855
pancreas
694
liver
630
connective tissue
468
adipose tissue
460
epithelium
306
heart
261
kidney
176
vasculature
174
blood vessel
173
brain
159
bone element
123
artery
69
blood
69
bodily fluid
57
eye
52
limb
38
musculature of body
33
embryo
25
nerve
20
lung
20
spleen
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
19
hg19
12
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bed broadPeak
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
5
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
3
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
2
1
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