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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
40
ChIP-seq
18
snATAC-seq
17
pCHi-C
16
ATAC-seq
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
40
DNA binding
34
DNA accessibility
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
5
RNA binding protein
Date released
121
May, 2021
45
May, 2020
20
February, 2023
16
January, 2021
6
May, 2022
Available data
220
bigWig
204
bam
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
208
Homo sapiens
Biosample type
125
primary cell
47
in vitro differentiated cells
34
tissue
2
cell line
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
149
T1D
59
AMP
Genome assembly (visualization)
106
hg19
96
GRCh38
Lab
2328
AMP-T2D consortium
324
Klaus Kaestner, Upenn
208
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bed narrowPeak
organ_slims!
limb
spleen
BIOSAMPLE
ASSAY
208 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
37
5
tissue
islet of Langerhans
11
6
11
pancreas
1
4
thymus
1
cell line
EndoC_BH1
2
See all biosamples
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