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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
84
ChIP-seq
19
ATAC-seq
Assay category
102
Transcription
84
DNA binding
19
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
45
May, 2020
24
May, 2022
1
March, 2019
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
205
Homo sapiens
Biosample type
180
primary cell
25
tissue
Organ
25
pancreas
Project
180
T1D
25
AMP
Genome assembly (visualization)
198
hg19
180
GRCh38
Lab
AMP-T2D consortium
204
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
csv
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
205 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
84
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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tissue
islet of Langerhans
6
19
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