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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
9
DNase-seq
4
ATAC-seq
2
WGBS
1
RRBS
Assay category
16
DNA binding
13
DNA accessibility
3
DNA methylation
Target of assay
10
histone
10
histone modification
6
RNA binding protein
6
narrow histone mark
6
transcription factor
4
broad histone mark
Date released
15
June, 2019
6
August, 2017
5
October, 2018
3
October, 2019
1
July, 2019
1
November, 2018
1
November, 2020
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
32
Homo sapiens
Biosample type
16
primary cell
13
tissue
3
in vitro differentiated cells
Organ
367
liver
130
brain
108
kidney
105
pancreas
102
heart
87
vasculature
85
limb
84
epithelium
82
blood vessel
64
musculature of body
54
blood
54
bodily fluid
32
connective tissue
26
nerve
25
artery
18
ureter
15
spleen
15
vein
13
adipose tissue
7
eye
1
pericardium
Project
32
AMP
Genome assembly (visualization)
29
hg19
27
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
RRBS
primary cell
cardiac fibroblast
3
3
1
mesenchymal stem cell
6
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
tissue
omental fat pad
3
2
adipose tissue
1
1
2
subcutaneous adipose tissue
2
1
subcutaneous abdominal adipose tissue
1
in vitro differentiated cells
adipocyte
1
2
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