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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
9
total RNA-seq
5
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
18
Transcription
16
DNA binding
10
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
32
August, 2021
19
April, 2020
Available data
12
bed narrowPeak
12
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
50
Homo sapiens
Biosample type
32
cell line
19
tissue
Organ
29
liver
19
lung
pancreas
2
kidney
Project
32
AMP
19
LungMap
Genome assembly (visualization)
13
hg19
Lab
2823
AMP-T2D consortium
229
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
32
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
organ_slims!
pancreas
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
16
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
lung
10
9
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