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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
2
total RNA-seq
1
snATAC-seq
Assay category
145
DNA binding
2
Transcription
1
DNA accessibility
Target of assay
61
histone
61
histone modification
52
transcription factor
34
broad histone mark
32
control
27
narrow histone mark
10
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
188
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
147
bam
131
fastq
114
bigWig
112
bed narrowPeak
90
bigBed narrowPeak
15
bed bed3+
2
tsv
Organism
148
Homo sapiens
Biosample type
100
tissue
43
in vitro differentiated cells
3
stem cell
2
primary cell
Organ
63
liver
54
pancreas
23
adipose tissue
connective tissue
21
epithelium
13
embryo
Project
148
AMP
Genome assembly (visualization)
119
GRCh38
119
hg19
Lab
148
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
assay_title!
CRISPR genome editing followed by DNA sequencing
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
148 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
tissue
liver
38
body of pancreas
33
endocrine pancreas
16
right lobe of liver
10
pancreas
2
+ See 1 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
primary cell
pancreatic acinar cell
2
See all biosamples
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