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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
303
ChIP-seq
Assay category
303
DNA binding
Target of assay
244
transcription factor
88
histone
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
May, 2020
303
November, 2017
294
August, 2021
260
February, 2021
257
May, 2021
200
May, 2022
189
June, 2019
188
February, 2023
166
July, 2018
155
August, 2017
115
October, 2019
90
July, 2019
80
November, 2018
60
December, 2017
59
March, 2020
59
September, 2020
50
November, 2019
47
April, 2018
47
September, 2023
41
September, 2018
33
December, 2018
28
May, 2019
23
February, 2018
23
February, 2020
23
October, 2018
20
April, 2019
19
April, 2020
17
January, 2019
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
302
bam
291
fastq
244
bigWig
224
bed narrowPeak
224
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
11
tagAlign
3
tar
Organism
303
Homo sapiens
Biosample type
285
cell line
12
tissue
6
primary cell
Organ
285
liver
18
brain
4
epithelium
4
vasculature
2
blood vessel
Project
303
AMP
Genome assembly (visualization)
242
hg19
194
GRCh38
Lab
303
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
CRISPR genome editing followed by DNA sequencing
organ_slims!
connective tissue
target.investigated_as!
chromatin remodeller
histone modification
BIOSAMPLE
ASSAY
303 results
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Clear Filters
ChIP-seq
cell line
HepG2
285
tissue
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
substantia nigra
2
+ See 1 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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