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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
237
total RNA-seq
134
single cell RNA-seq
68
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
pCHi-C
Assay category
371
Transcription
109
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
106
August, 2017
79
February, 2023
50
July, 2018
49
February, 2021
44
April, 2018
41
September, 2018
41
September, 2020
24
May, 2022
18
November, 2018
15
February, 2018
8
October, 2017
7
August, 2020
5
January, 2018
5
January, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
December, 2018
1
March, 2019
Available data
1813
bam
1779
bigWig
1569
tsv
500
fastq
492
bed narrowPeak
241
bigBed narrowPeak
218
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
hic
20
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
1
bedpe
1
tar
1
vcf
Organism
507
Homo sapiens
Biosample type
315
primary cell
157
tissue
27
in vitro differentiated cells
7
cell line
1
stem cell
Organ
324
pancreas
185
epithelium
14
connective tissue
13
liver
6
adipose tissue
5
embryo
4
spleen
3
brain
2
musculature of body
Project
338
AMP
169
HPAP
Genome assembly (visualization)
311
hg19
299
GRCh38
5
hg18
Lab
309
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
8
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
ChIP-seq
pCHi-C
BIOSAMPLE
ASSAY
507 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
primary cell
pancreatic alpha cell
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
21
12
10
exocrine cell
39
pancreatic acinar cell
4
9
5
+ See 14 more…
tissue
islet of Langerhans
97
6
20
1
1
body of pancreas
4
2
2
liver
1
2
1
spleen
1
2
1
adipose tissue
3
+ See 7 more…
in vitro differentiated cells
adipocyte
4
1
pancreatic endoderm
4
1
definitive endodermal cell
2
1
embryonic stem cell
2
1
primitive gut cell
2
1
+ See 6 more…
cell line
HepG2
5
1
1
stem cell
hESC
1
See all biosamples
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