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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
115
total RNA-seq
39
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
Assay category
115
Transcription
57
DNA accessibility
Date released
81
May, 2021
45
May, 2020
26
February, 2023
24
May, 2022
16
January, 2021
4
August, 2021
Available data
120
bam
108
bigWig
96
tsv
24
fastq
22
bed narrowPeak
9
txt
4
bed bed3+
3
bed bedgraph
Organism
196
Homo sapiens
Biosample type
122
primary cell
52
tissue
17
in vitro differentiated cells
5
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
152
T1D
44
AMP
Genome assembly (visualization)
128
hg19
96
GRCh38
Lab
2250
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
ChIP-seq
month_released!
October, 2018
BIOSAMPLE
ASSAY
196 results
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total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
6
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
cell line
EndoC_BH1
3
2
See all biosamples
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