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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
Assay category
88
DNA binding
Target of assay
54
histone
54
histone modification
35
transcription factor
29
narrow histone mark
25
broad histone mark
6
chromatin remodeller
3
RNA binding protein
recombinant protein
Date released
39
August, 2017
32
September, 2018
10
November, 2017
4
October, 2017
2
November, 2018
1
December, 2017
Available data
88
fastq
87
bam
86
bigWig
48
bed narrowPeak
15
bigBed narrowPeak
14
bed bed3+
4
tagAlign
2
bed broadPeak
Organism
88
Homo sapiens
Biosample type
44
primary cell
26
tissue
12
cell line
6
in vitro differentiated cells
Organ
54
pancreas
21
epithelium
17
connective tissue
12
adipose tissue
12
liver
4
brain
1
embryo
Project
88
AMP
Genome assembly (visualization)
86
hg19
79
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
88
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
assay_title!
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
88 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
tissue
white adipose tissue
12
islet of Langerhans
10
brain
4
cell line
HepG2
12
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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