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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
CRISPR genome editing followed by DNA sequencing
2
ChIP-seq
2
HiChIP
2
total RNA-seq
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
3
Transcription
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
5
February, 2023
3
March, 2020
1
March, 2023
1
May, 2021
Available data
4
bam
4
bigWig
2
bed narrowPeak
2
tsv
Organism
9
Homo sapiens
Biosample type
529
primary cell
97
tissue
10
cell line
2
stem cell
Organ
4
epithelium
4
pancreas
Project
AMP
9
T1D
1
community
Genome assembly (visualization)
4
GRCh38
4
hg19
Lab
5
Kyle Gaulton, UCSD
4
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
GRO-seq
shRNA RNA-seq
award.project!
AMP
BIOSAMPLE
ASSAY
10 results
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CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
total RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
3
2
2
2
EndoC-BH1
1
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