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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
snATAC-seq
Assay category
72
Transcription
4
DNA accessibility
Date released
57
August, 2021
7
February, 2023
7
May, 2022
5
February, 2021
Available data
2799
bam
2642
bigWig
1479
tsv
1408
bed narrowPeak
920
fastq
682
bigBed narrowPeak
378
tagAlign
268
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
153
zippedFastqFolder
76
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
76
Homo sapiens
Biosample type
73
tissue
3
in vitro differentiated cells
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
76
AMP
Genome assembly (visualization)
4
hg19
Lab
57
Katalin Susztak, Upenn
10
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
1
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
biosample_type!
cell line
month_released!
September, 2017
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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