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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
105
ChIP-seq
102
single cell RNA-seq
57
total RNA-seq
RRBS
6
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
161
Transcription
131
DNA accessibility
105
DNA binding
6
3D chromatin structure
1
DNA methylation
Target of assay
76
histone
76
histone modification
39
narrow histone mark
37
broad histone mark
32
control
Date released
102
May, 2020
59
September, 2018
48
July, 2018
43
April, 2018
39
August, 2017
22
July, 2019
21
October, 2019
20
May, 2021
12
February, 2023
8
June, 2019
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
March, 2020
1
May, 2019
1
November, 2018
Available data
429
bam
388
bigWig
239
fastq
181
bed narrowPeak
168
tsv
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
405
Homo sapiens
Biosample type
1853
tissue
405
primary cell
323
in vitro differentiated cells
259
cell line
8
stem cell
Organ
187
epithelium
172
pancreas
22
connective tissue
17
kidney
15
vasculature
14
blood vessel
11
liver
9
brain
9
vein
6
heart
4
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
405
AMP
Genome assembly (visualization)
298
hg19
240
GRCh38
Lab
405
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
24
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
CRISPR genome editing followed by sgRNA sequencing
RRBS
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
405 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
DNase-seq
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
13
12
10
pancreatic beta cell
13
12
10
pancreatic ductal cell
13
10
4
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
pancreatic acinar cell
8
12
4
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