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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
32
ChIP-seq
20
ATAC-seq
small RNA-seq
13
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
74
Transcription
32
DNA binding
25
DNA methylation
22
DNA accessibility
8
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
3
control
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
193
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
90
December, 2017
88
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
139
bigWig
136
bam
73
fastq
73
tsv
53
bed narrowPeak
21
bed bedMethyl
21
bigBed bedMethyl
16
bigBed narrowPeak
4
bed bed3+
4
hdf5
1
csv
Organism
161
Homo sapiens
Biosample type
100
primary cell
61
tissue
Organ
76
pancreas
73
epithelium
23
heart
14
brain
14
connective tissue
12
vasculature
11
blood vessel
9
adipose tissue
9
kidney
8
musculature of body
7
liver
5
limb
3
artery
2
pericardium
1
eye
Project
161
AMP
Genome assembly (visualization)
143
hg19
133
GRCh38
Lab
161
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
32
missing controlled_by
assay_title!
CRISPR genome editing followed by sgRNA sequencing
small RNA-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
161 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
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tissue
heart left ventricle
2
2
1
4
gastrocnemius medialis
4
omental fat pad
4
subcutaneous adipose tissue
4
heart
2
1
+ See 25 more…
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