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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ATAC-seq
73
total RNA-seq
55
ChIP-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
105
DNA accessibility
73
Transcription
55
DNA binding
49
DNA methylation
8
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
104
May, 2022
55
February, 2023
30
August, 2017
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
8
March, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
October, 2022
2
July, 2019
2
March, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
Available data
113
fastq
80
zippedFastqFolder
67
bam
26
bed narrowPeak
12
bigWig
11
tagAlign
11
tsv
7
bedpe bed3+
7
hic
bed broadPeak
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
302
Homo sapiens
Biosample type
154
primary cell
112
tissue
36
cell line
1
in vitro differentiated cells
Organ
303
pancreas
246
liver
227
epithelium
149
kidney
127
heart
117
connective tissue
93
bone element
68
brain
66
adipose tissue
55
eye
43
vasculature
41
blood vessel
30
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
HPAP
133
AMP
28
T1D
Genome assembly (visualization)
639
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
96
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
29
inconsistent ontology term
4
audit script error
assay_title!
CRISPR genome editing followed by sgRNA sequencing
assembly!
GRCh38
files.file_type!
bed broadPeak
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
303 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
35
18
19
7
4
3
1
1
pancreas
1
3
4
1
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
EndoC_BH1
18
2
6
1
2
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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